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ri nucleotides based loci at 47%. Similarly, class I microsatellites were more polymorphic on average with 88 out of 125 SSRs showing allelic difference compared to class II microsatellites with only 26 out of 41 with allele differences. In terms of the individual motifs, AT TA motif microsatellites were highly polymorphic, Genetic mapping of BES SSRs The 114 polymorphic SC144 BMb markers identified in the par ental screening were scored in the recombinant inbred line mapping population based on the cross DOR364 × G19833 and integrated into the genetic map for this population from Blair et al, Integration was suc cessful with a total of 99 new BMb markers mapped into the genetic map with a high LOD score. Molecular mar kers mapping with a LOD below 3. 0 or unassigned to established linkage group were excluded from the map.

For example, the SSR markers BMb35, BMb162, BMb214, BMb283, BMb363, BMb365 and BMb535 could not be mapped since they were assigned to more than one linkage group with equivalent LOD scores. The markers BMb483, BMb424, BMb545 were assigned to only one linkage group but their LOD scores were lower than BIO GSK-3 inhibitor 3. 0. Finally another set of markers presented distances from neigh boring markers longer than 20 cM and therefore were not included given the high saturation of the map. The new genetic map which included 116 previously mapped SSR loci from Blair et al. was found to cover 1,397 cM and had a total of 215 SSRs all together with an average distance between neighboring loci of 6. 6 cM, Linkage group lengths ranged from 171. 8 cM to 80.

8 cM and a greater num ber Dynasore of BMb loci were placed on b08f, and b02d and a lower number on b06g compared Haematopoiesis to other linkage groups. Despite this, the distribution of the BMb loci was found to be random across all linkage groups according to a chi square test, While most linkage groups had close to the average of 9 BMb loci per linkage group, BMb loci were predomi nant on linkage groups b01h, b08f and b10j compared to previous SSR loci. Finally, segregation distortion was observed for 27 out of the 99 newly mapped loci, this means that the expected ratio of 1. 1 was not observed in the progeny for these markers with chi square tests at p 0. 05. Most of these PluriSln 1 loci with segregation distor tion were mapped on linkage groups b08f, SC144 b03c or b02d.

Segregation distortion was towards the parental genotype G19833 on linkage group b01h, b02d, b06g and b08f, while in b03c, b07a and b09k PluriSln 1 segregation dis tortion was towards DOR364. Integrated genetic physical map for SC144 common bean The information from genetic mapping of the BES SSRs was then used to create an integrated genetic and physical map for the common bean genome. This inte grated map is presented in Figures 2 and 3 with various components shown diagrammatically. for example to the far left of the figure is the genetic map shown as a con tinuous line with genetic distances in cM. The physical map is shown as a series of smaller lines adjacent to the genetic map, representing anchored BAC clones and their corresponding contigs. Anchoring points between both maps are depicted as grey squares representing mapped SSR loci on the genetic map and BAC ends.

Integration points are numbered sequentially from the top to the bottom of the linkage group and orientation of the linkage groups follows Blair et al, The BAC clones and corresponding contigs associated with each anchoring microsatellite marker are given PluriSln 1 for the 99 linkage points throughout the genome, To facilitate interpretation of the physical linkages with the genetic map, we represented each BAC clone as a line that is proportional to its length and showed whether the BES SSR was anchored to the forward 5 or reverse 3 BAC end by orientation of the grey box at the top or bot tom of the line, respectively. Finally, for consistency between new BMb markers and the BM, BMc and BMd markers mapped by Blair et al, the ATA rich markers from Blair et al. are re named as BMa mar kers with the same numerical i